scGTM is the abbreviation for Single-cell Gene Expression Generalized Trend Model. This is a R package for modeling the statistical relationship between pseudotime and gene expression data. The paper is available at Bioinformatics.
It is intended for bioinformatic scientists, applied statisticians, and students who prefer using Metaheuristic algorithms in solving their own bioinformatic optimization problems. scGKM is able to provide various marginal gene distributions with interpretable regression functions. Check out more features!
- Free software: MIT license
Installation
The package is not on Bioconductor or CRAN yet. For installation please use the following codes in R.
install.packages("devtools")
library(devtools)
devtools::install_github("Sylviama1026/scGTM")